JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD5_chr2_207757598_207774906	0/0	t0058	5271	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0059	5279	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0060	5280	1	0	0	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0061	5247	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0062	5280	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0063	5280	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0064	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0065	5281	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0066	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0067	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0068	5279	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0069	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0070	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0071	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0072	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0073	5280	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0074	5279	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0075	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0076	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0077	5281	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0078	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0079	5282	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0080	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0081	5280	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0082	5281	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0083	5280	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0084	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0085	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0086	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0087	5280	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0088	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD6_chr8_103293898_103337866	0/1	t0001	1607	180	59	47	50	5	18	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0002	1607	79	2	11	50	4	12	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0003	1607	37	17	0	17	0	3	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0004	1607	26	5	0	19	1	1	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0005	1607	20	1	4	5	4	6	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0006	1607	7	0	0	7	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0007	1607	7	7	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0008	1607	4	0	2	0	2	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0009	1607	2	2	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	1/0	t0010	1608	1	0	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0011	1607	1	0	0	1	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0012	1607	1	0	0	1	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	t0013	1607	1	1	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD7_chr2_202028855_202043441	1/0	t0001	2863	140	35	25	61	3	15	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0002	2863	88	6	12	51	2	17	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0003	2863	84	8	12	59	1	4	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/1	t0004	2854	40	9	20	1	6	3	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0005	2864	16	15	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0006	2860	11	1	5	0	4	1	copy fasta	FZD7	chr2	202028855	202043441