JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD7_chr2_202028855_202043441	0/0	t0007	2854	6	6	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0008	2854	6	6	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0009	2869	3	0	0	3	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0010	2863	3	0	0	1	0	2	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0011	2881	2	0	0	2	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0012	2863	2	2	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0013	2860	2	2	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0014	2884	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0015	2863	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0016	2863	1	1	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0017	2863	1	0	0	0	0	1	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0018	2863	1	1	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0019	2863	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0020	2863	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0021	2863	1	0	1	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0022	2863	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0023	2863	1	1	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0024	2863	1	0	0	0	0	1	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0025	2863	1	0	0	0	0	1	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0026	2863	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0027	2863	1	0	1	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0028	2863	1	1	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0029	2860	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	t0030	2854	1	0	0	0	0	1	copy fasta	FZD7	chr2	202028855	202043441
FZD8_chr10_35633247_35647296	0/1	t0001	1967	85	8	11	50	3	12	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0002	1968	79	3	7	54	3	12	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0003	1968	39	11	7	18	0	3	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0004	1968	34	1	12	11	2	8	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0005	1962	20	6	0	14	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0006	1967	16	9	2	3	1	1	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0007	1968	13	0	3	9	1	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0008	1967	10	10	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0009	1964	9	4	3	0	1	1	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0010	1963	8	6	1	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0011	1969	7	0	1	6	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0012	1966	7	0	2	5	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0013	1967	5	2	3	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0014	1966	5	5	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0015	1965	4	3	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0016	1968	4	2	2	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0017	1968	4	2	1	0	0	1	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0018	1961	4	3	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0019	1966	4	3	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0020	1966	3	0	0	3	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0021	1969	3	0	1	1	0	1	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0022	1968	2	2	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0023	1962	2	1	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0024	1969	2	2	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0025	1967	2	0	1	0	0	1	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0026	1967	2	2	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296