JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD8_chr10_35633247_35647296	0/0	t0027	1966	2	0	1	0	1	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	1/0	t0028	1966	2	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0029	1967	2	0	1	0	1	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0030	1968	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0031	1967	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0032	1968	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0033	1966	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0034	1968	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0035	1968	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0036	1967	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0037	1963	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0038	1964	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0039	1962	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0040	1963	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0041	1962	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0042	1970	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0043	1968	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0044	1967	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0045	1966	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0046	1966	1	0	0	0	1	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0047	1966	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0048	1966	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0049	1969	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0050	1967	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0051	1967	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0052	1968	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0053	1968	1	0	1	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	t0054	1966	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD9_chr7_73428778_73441120	1/0	t0001	568	282	44	63	132	9	33	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/1	t0002	568	78	34	8	23	5	7	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	t0003	568	3	2	1	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	t0004	568	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	t0005	568	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	t0006	568	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZR1_chr19_3501311_3543334	1/1	t0001	3697	70	11	17	26	4	10	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0002	3698	57	2	17	24	0	14	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0003	3698	37	0	6	31	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0004	3698	20	18	2	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0005	3698	20	12	1	0	0	7	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0006	3698	14	0	8	0	2	4	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0007	3698	12	10	1	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0008	3699	6	6	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0009	3697	6	0	0	6	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0010	3698	5	5	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0011	3698	5	5	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0012	3698	5	4	1	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0013	3691	4	0	1	3	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0014	3698	3	0	2	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0015	3698	3	0	0	0	1	2	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0016	3697	3	1	0	1	0	1	copy fasta	FZR1	chr19	3501311	3543334