Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH1A3_chr15_100874831_100921626	0/0	t0006	1931	12	0	1	11	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0007	1931	7	7	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0008	1931	6	2	0	4	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0009	1930	5	4	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0010	1931	3	2	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0011	1931	3	3	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0012	1931	2	2	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0013	1931	2	2	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0014	1931	2	0	2	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0015	1931	2	0	1	0	0	1	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0016	1931	2	1	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0017	1931	2	2	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0018	1930	2	2	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0019	1931	2	2	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0020	1931	1	1	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0021	1931	1	1	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0022	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0023	1916	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0024	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0025	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0026	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0027	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0028	1931	1	0	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0029	1931	1	1	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0030	1931	1	0	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0031	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0032	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0033	1931	1	0	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0034	1931	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0035	1931	1	0	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0036	1931	1	0	0	0	1	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0037	1931	1	0	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0038	1930	1	1	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0039	1931	1	1	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1B1_chr9_38387702_38403661	0/0	t0001	1476	131	11	23	72	5	20	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0002	1475	96	21	14	46	7	8	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	1/0	t0003	1475	77	18	20	37	0	1	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/1	t0004	1475	55	2	11	24	4	13	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0005	1476	52	10	7	32	0	3	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0006	1474	18	14	2	1	0	1	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0007	1475	8	0	3	2	2	1	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0008	1476	7	4	1	2	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0009	1476	6	6	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0010	1475	5	0	0	5	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0011	1475	5	0	3	0	0	2	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0012	1475	5	5	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0013	1476	5	0	0	5	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0014	1476	2	0	1	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0015	1476	2	1	0	0	0	1	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0016	1475	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661