JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZR1_chr19_3501311_3543334	0/0	t0017	3698	2	0	2	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0018	3698	2	0	1	0	1	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0019	3698	2	0	0	2	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0020	3698	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0021	3699	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0022	3698	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0023	3698	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0024	3698	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0025	3698	2	0	1	0	1	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0026	3686	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0027	3698	1	0	0	1	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0028	3698	1	0	0	1	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0029	3698	1	0	0	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0030	3698	1	0	0	1	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0031	3681	1	0	0	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0032	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0033	3697	1	0	1	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0034	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0035	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0036	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0037	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0038	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0039	3699	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0040	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0041	3698	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0042	3698	1	0	0	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0043	3698	1	0	1	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0044	3698	1	0	1	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0045	3698	1	0	0	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0046	3697	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0047	3697	1	0	0	0	1	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0048	3697	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0049	3697	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	t0050	3698	1	0	1	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
G0S2_chr1_209670412_209681390	0/1	t0001	563	208	34	39	89	12	33	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0002	564	95	34	18	27	6	10	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	1/0	t0003	565	67	0	8	57	0	1	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0004	565	32	0	2	30	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0005	564	15	15	0	0	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0006	563	1	0	1	0	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0007	563	1	0	0	1	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0008	564	1	1	0	0	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0009	565	1	0	0	1	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0010	564	1	1	0	0	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0011	565	1	0	0	1	0	0	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	t0012	564	1	1	0	0	0	0	copy fasta	G0S2	chr1	209670412	209681390
G2E3_chr14_30554158_30625064	0/0	t0001	3667	109	29	15	58	1	6	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	1/1	t0002	3650	101	10	19	54	5	11	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0003	3667	38	10	6	19	2	1	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0004	3644	29	2	2	22	0	3	copy fasta	G2E3	chr14	30554158	30625064