JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
G2E3_chr14_30554158_30625064	0/0	t0005	3667	10	3	2	0	0	5	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0006	3670	9	9	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0007	3627	8	0	0	8	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0008	3650	6	0	6	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0009	3667	5	5	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0010	3666	5	5	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0011	3667	5	5	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0012	3650	5	0	0	5	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0013	3667	3	2	1	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0014	3667	2	2	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0015	3667	2	1	1	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0016	3667	2	2	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0017	3667	2	0	2	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0018	3667	2	0	0	2	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0019	3656	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0020	3667	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0021	3650	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0022	3650	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0023	3650	1	0	1	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0024	3650	1	0	0	0	0	1	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0025	3650	1	0	1	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0026	3667	1	0	0	0	0	1	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0027	3667	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0028	3667	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0029	3667	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0030	3650	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	t0031	3667	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G3BP1_chr5_151766954_151817785	1/1	t0001	8827	127	20	30	59	5	11	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0002	8829	54	2	2	44	0	6	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0003	8827	22	15	1	1	3	2	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0004	8829	15	0	12	0	2	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0005	8827	13	2	3	5	0	3	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0006	8827	6	4	2	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0007	8827	5	5	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0008	8827	4	2	2	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0009	8827	4	0	0	0	3	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0010	8829	4	1	2	0	0	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0011	8827	4	4	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0012	8827	4	0	1	3	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0013	8828	4	4	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0014	8826	3	0	0	2	0	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0015	8827	3	3	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0016	8827	3	3	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0017	8827	3	0	0	0	0	3	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0018	8827	3	2	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0019	8827	3	3	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0020	8828	2	2	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0021	8828	2	2	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0022	8827	2	1	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0023	8827	2	2	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785