JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
G3BP1_chr5_151766954_151817785	0/0	t0024	8827	2	0	0	2	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0025	8827	2	0	0	0	0	2	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0026	8828	2	1	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0027	8829	2	0	2	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0028	8828	2	0	0	2	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0029	8829	2	0	0	2	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0030	8827	2	1	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0031	8827	2	2	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0032	8827	2	0	0	0	2	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0033	8827	1	0	0	0	0	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0034	8827	1	0	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0035	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0036	8829	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0037	8826	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0038	8827	1	0	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0039	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0040	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0041	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0042	8827	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0043	8827	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0044	8827	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0045	8827	1	0	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0046	8827	1	0	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0047	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0048	8827	1	0	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0049	8827	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0050	8827	1	0	0	0	1	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0051	8829	1	0	0	0	0	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0052	8829	1	0	0	0	0	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0053	8828	1	0	0	0	0	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0054	8827	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0055	8827	1	0	0	0	0	1	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0056	8826	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0057	8826	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0058	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0059	8827	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0060	8827	1	0	1	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0061	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0062	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0063	8827	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	t0064	8828	1	1	0	0	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP2_chr4_75637786_75678411	0/0	t0001	2871	102	11	24	50	4	13	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	1/1	t0002	2873	58	9	11	22	5	9	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0003	2874	53	4	12	23	1	13	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0004	2874	7	7	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0005	2911	6	2	2	1	1	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0006	2911	6	4	0	1	1	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0007	2913	6	6	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0008	2874	5	5	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0009	2891	5	0	0	5	0	0	copy fasta	G3BP2	chr4	75637786	75678411