JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
G3BP2_chr4_75637786_75678411	0/0	t0010	2905	5	3	0	1	1	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0011	2873	4	4	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0012	2875	4	3	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0013	2899	4	1	1	1	0	1	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0014	2905	4	1	1	1	0	1	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0015	2893	3	3	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0016	2897	3	1	2	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0017	2907	3	1	0	2	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0018	2917	3	0	2	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0019	2899	3	0	2	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0020	2907	3	2	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0021	2874	2	0	1	0	1	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0022	2877	2	0	2	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0023	2895	2	2	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0024	2901	2	1	0	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0025	2909	2	0	1	0	1	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0026	2887	2	0	1	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0027	2909	2	1	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0028	2917	2	2	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0029	2878	2	2	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0030	2871	2	0	0	0	0	2	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0031	2905	2	2	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0032	2905	1	1	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0033	2873	1	0	0	0	0	1	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0034	2874	1	0	0	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0035	2871	1	0	0	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0036	2915	1	0	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0037	2887	1	0	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0038	2903	1	0	0	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0039	2915	1	0	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0040	2873	1	0	0	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0041	2871	1	1	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0042	2904	1	1	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0043	2897	1	0	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0044	2901	1	1	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0045	2903	1	1	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0046	2915	1	0	0	0	1	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0047	2919	1	0	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0048	2921	1	0	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0049	2871	1	0	0	1	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0050	2873	1	1	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0051	2874	1	0	1	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G3BP2_chr4_75637786_75678411	0/0	t0052	2913	1	1	0	0	0	0	copy fasta	G3BP2	chr4	75637786	75678411
G6PC1_chr17_42895799_42919438	0/0	t0001	3084	159	32	33	63	11	20	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	1/1	t0002	3091	106	4	24	62	4	10	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0003	3083	23	18	4	1	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0004	3083	10	1	1	6	1	1	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0005	3091	9	9	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0006	3084	6	6	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0007	3091	6	6	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438