JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
G6PC1_chr17_42895799_42919438	0/0	t0008	3084	5	0	1	3	0	1	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0009	3084	4	0	1	0	0	3	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0010	3084	4	0	0	0	0	4	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0011	3091	4	4	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0012	3093	4	3	1	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0013	3091	4	4	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0014	3091	3	0	0	0	0	3	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0015	3084	3	0	0	3	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0016	3091	2	2	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0017	3091	1	0	0	1	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0018	3084	1	0	1	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0019	3083	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0020	3083	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0021	3084	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0022	3083	1	0	0	1	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0023	3084	1	0	0	1	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0024	3084	1	0	1	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0025	3084	1	0	1	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0026	3084	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0027	3094	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0028	3091	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0029	3092	1	0	0	1	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	t0030	3091	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC2_chr2_168896291_168915000	0/1	t0001	1963	196	33	37	101	8	16	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0002	1963	158	30	30	68	8	22	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0003	1963	13	0	0	12	0	1	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0004	1963	11	10	1	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0005	1963	10	10	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0006	1963	5	0	0	5	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0007	1963	5	0	4	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0008	1963	4	4	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0009	1963	3	3	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0010	1963	3	3	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0011	1963	2	0	2	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0012	1963	2	2	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0013	1963	2	0	0	2	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0014	1963	2	0	0	0	0	2	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0015	1963	2	0	0	2	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0016	1963	2	0	1	0	0	1	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0017	1963	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0018	1963	1	0	1	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0019	1963	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0020	1963	1	1	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	t0021	1963	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC3_chr17_44065735_44081344	1/0	t0001	533	219	79	34	94	2	9	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/1	t0002	533	130	1	37	54	5	32	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	t0003	533	25	3	9	8	2	3	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	t0004	533	8	8	0	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	t0005	533	1	0	0	0	1	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	t0006	533	1	1	0	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344