JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
G6PD_chrX_154526391_154551846	0/1	t0001	676	160	4	38	93	8	16	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	1/0	t0002	676	108	63	16	17	1	10	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0003	673	9	9	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0004	676	1	0	0	0	0	1	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0005	673	1	1	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0006	676	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0007	676	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0008	676	1	0	0	0	0	1	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0009	676	1	0	1	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0010	676	1	1	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	t0011	676	1	0	1	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
GAA_chr17_80096581_80124881	1/0	t0001	893	110	29	26	46	2	6	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0002	894	82	0	10	64	1	7	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/1	t0003	893	61	11	8	26	6	9	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0004	893	40	10	2	20	0	8	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0005	893	37	24	8	0	2	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0006	893	32	3	12	7	3	7	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0007	893	22	1	8	8	2	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0008	894	12	4	2	3	0	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0009	893	8	8	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0010	893	4	3	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0011	893	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0012	883	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0013	893	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0014	894	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0015	894	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0016	894	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0017	894	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	t0018	893	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAB1_chr4_143331876_143479565	0/1	t0001	5690	45	2	16	14	4	8	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0002	5690	40	19	4	6	3	8	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0003	5686	21	17	2	0	2	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0004	5686	16	13	3	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0005	5690	14	14	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0006	5690	8	1	5	0	1	1	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0007	5690	4	0	2	0	0	2	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0008	5690	4	4	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0009	5690	3	3	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0010	5690	3	3	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0011	5690	3	2	1	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0012	5690	2	0	2	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0013	5690	2	0	0	2	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0014	5690	2	1	1	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0015	5690	2	2	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0016	5690	2	2	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0017	5690	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0018	5690	1	0	0	1	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0019	5690	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0020	5686	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	1/0	t0021	5690	1	0	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565