JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAB1_chr4_143331876_143479565	0/0	t0022	5690	1	0	1	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0023	5690	1	0	0	1	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0024	5690	1	0	0	0	0	1	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0025	5690	1	0	0	1	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0026	5690	1	0	0	1	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0027	5690	1	0	1	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0028	5690	1	0	0	1	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0029	5690	1	0	1	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0030	5690	1	0	0	0	0	1	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0031	5690	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0032	5690	1	0	0	0	0	1	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0033	5690	1	0	0	0	0	1	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0034	5690	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0035	5690	1	0	1	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0036	5690	1	0	0	1	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0037	5690	1	0	0	0	0	1	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0038	5690	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	t0039	5690	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB2_chr11_78210293_78422820	0/0	t0001	4080	71	16	19	24	2	10	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0002	4085	58	1	15	40	1	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	1/0	t0003	4080	38	0	3	30	0	4	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0004	4080	17	17	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0005	4085	8	4	0	3	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0006	4085	7	7	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0007	4085	7	7	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0008	4084	5	5	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0009	4085	5	5	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0010	4080	4	0	0	4	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0011	4085	4	0	3	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0012	4042	4	3	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0013	4085	3	3	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0014	4080	3	0	0	3	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0015	4078	3	3	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0016	4081	3	3	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0017	4081	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0018	4087	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0019	4084	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0020	4084	2	2	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0021	4085	2	2	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0022	4080	2	1	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0023	4084	2	1	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0024	4080	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0025	4085	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0026	4080	1	0	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0027	4085	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0028	4085	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0029	4085	1	0	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0030	4084	1	0	0	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0031	4087	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0032	4085	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820