JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAB2_chr11_78210293_78422820	0/0	t0033	4080	1	0	0	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0034	4085	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0035	4080	1	0	0	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0036	4085	1	0	0	0	1	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0037	4085	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0038	4080	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0039	4084	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0040	4085	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0041	4085	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0042	4085	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0043	4084	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0044	4080	1	0	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0045	4080	1	0	0	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0046	4080	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0047	4085	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0048	4080	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0049	4080	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0050	4080	1	0	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0051	4080	1	0	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0052	4080	1	0	0	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0053	4085	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/1	t0054	4084	1	0	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	t0055	4085	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB3_chrX_154670249_154756077	0/1	t0001	2982	91	3	21	52	4	10	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	1/0	t0002	2982	50	33	3	3	1	9	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0003	2982	40	1	22	12	2	3	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0004	2981	13	12	1	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0005	2982	13	0	1	10	2	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0006	2982	11	10	1	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0007	2981	8	0	0	8	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0008	2981	7	7	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0009	2983	4	0	1	2	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0010	2981	3	3	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0011	2982	2	0	0	0	2	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0012	2982	2	0	2	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0013	2983	2	0	0	2	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0014	2982	1	1	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0015	2982	1	1	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0016	2982	1	1	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0017	2982	1	1	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0018	2982	1	1	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0019	2982	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0020	2982	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0021	2983	1	0	0	0	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0022	2984	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0023	2981	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	t0024	2983	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB4_chr22_16956936_17013222	0/1	t0001	906	141	13	27	76	2	22	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0002	906	106	23	9	68	4	2	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	1/0	t0003	906	84	13	15	33	4	18	copy fasta	GAB4	chr22	16956936	17013222