JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAB4_chr22_16956936_17013222	0/0	t0004	906	57	19	23	9	5	1	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0005	906	14	14	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0006	906	12	11	1	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0007	906	6	0	5	0	0	1	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0008	906	3	0	0	3	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0009	906	3	2	0	0	1	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0010	906	2	0	0	2	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0011	906	1	0	0	1	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	t0012	906	1	1	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GABARAPL1_chr12_10207877_10228128	0/0	t0001	1529	94	5	12	70	0	7	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/1	t0002	1530	93	11	37	12	11	21	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	1/0	t0003	1530	57	16	3	34	0	3	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0004	1529	51	8	3	36	0	4	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0005	1530	40	10	6	19	0	5	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0006	1530	36	9	4	22	0	1	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0007	1530	24	0	5	12	1	6	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0008	1530	21	19	1	1	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0009	1530	12	12	0	0	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0010	1530	12	0	3	1	6	2	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0011	1530	2	2	0	0	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0012	1530	1	0	0	1	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0013	1529	1	0	0	1	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0014	1529	1	0	0	0	0	1	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0015	1530	1	0	0	1	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0016	1529	1	0	0	1	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL1_chr12_10207877_10228128	0/0	t0017	1529	1	0	0	1	0	0	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL2_chr16_75561379_75582881	1/1	t0001	621	329	68	68	134	12	45	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0002	621	27	14	2	10	0	1	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0003	620	5	0	0	5	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0004	621	1	0	1	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0005	621	1	0	0	1	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0006	621	1	1	0	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0007	621	1	0	1	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0008	621	1	1	0	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0009	633	1	1	0	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	t0010	621	1	1	0	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAP_chr17_7235008_7247449	1/1	t0001	966	293	71	65	116	15	24	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0002	966	52	4	3	45	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0003	966	22	0	1	12	2	7	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0004	966	8	8	0	0	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0005	966	4	3	1	0	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0006	966	2	2	0	0	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0007	966	2	2	0	0	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0008	966	1	0	0	0	1	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0009	966	1	0	1	0	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0010	966	1	0	0	0	0	1	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0011	966	1	0	1	0	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	t0012	966	1	0	0	1	0	0	copy fasta	GABARAP	chr17	7235008	7247449
GABBR1_chr6_29597238_29638183	0/0	t0001	1640	295	71	53	128	10	33	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/1	t0002	1640	40	7	8	16	1	7	copy fasta	GABBR1	chr6	29597238	29638183