JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABBR1_chr6_29597238_29638183	0/0	t0003	1640	29	4	3	20	0	2	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0004	1640	17	0	3	12	0	2	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0005	1640	6	0	5	0	1	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0006	1640	4	2	2	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0007	1640	3	3	0	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0008	1640	2	1	1	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0009	1640	1	0	0	1	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0010	1640	1	1	0	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0011	1640	1	0	0	1	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0012	1640	1	1	0	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0013	1640	1	1	0	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0014	1640	1	0	0	1	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0015	1640	1	0	0	0	0	1	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0016	1640	1	0	0	1	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0017	1640	1	0	0	0	0	1	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0018	1640	1	0	1	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	t0019	1640	1	1	0	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR2_chr9_98283109_98713935	0/0	t0001	2671	23	3	7	9	1	3	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0002	2675	15	14	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	1/1	t0003	2674	11	3	1	3	0	2	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0004	2669	11	0	6	5	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0005	2671	9	0	2	6	0	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0006	2672	9	8	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0007	2672	8	0	2	3	1	2	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0008	2672	8	0	3	3	0	2	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0009	2674	6	0	3	1	0	2	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0010	2675	4	2	2	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0011	2674	4	4	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0012	2673	4	0	1	1	0	2	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0013	2670	4	4	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0014	2674	3	3	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0015	2675	3	3	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0016	2673	2	2	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0017	2675	2	2	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0018	2674	2	0	1	1	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0019	2671	2	0	2	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0020	2670	2	0	0	2	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0021	2669	2	0	1	0	0	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0022	2671	2	0	2	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0023	2672	2	0	1	1	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0024	2674	1	0	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0025	2675	1	0	0	0	0	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0026	2673	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0027	2673	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0028	2672	1	0	0	0	1	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0029	2673	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0030	2676	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0031	2674	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0032	2674	1	0	0	0	0	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0033	2675	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935