Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH1B1_chr9_38387702_38403661	0/0	t0017	1474	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0018	1474	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0019	1476	1	0	1	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0020	1476	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0021	1475	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0022	1475	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0023	1475	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0024	1475	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	t0025	1475	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1L1_chr3_126098570_126185586	1/1	t0001	356	338	94	64	142	12	24	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L2_chr12_105014790_105089458	1/0	t0001	4657	99	19	32	25	5	17	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/1	t0002	4658	62	1	13	34	1	12	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0003	4659	48	5	7	31	0	5	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0004	4659	30	7	2	21	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0005	4658	28	1	0	27	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0006	4658	27	5	5	14	2	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0007	4657	10	10	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0008	4659	10	8	2	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0009	4657	9	8	1	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0010	4657	8	0	3	0	2	3	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0011	4658	8	0	2	6	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0012	4657	7	6	0	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0013	4656	4	4	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0014	4659	4	0	0	4	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0015	4659	3	3	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0016	4658	3	0	0	3	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0017	4658	2	1	1	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0018	4657	2	2	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0019	4657	2	0	0	2	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0020	4657	2	0	0	2	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0021	4659	2	0	0	1	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0022	4659	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0023	4657	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0024	4659	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0025	4657	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0026	4657	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0027	4656	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0028	4658	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0029	4657	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0030	4657	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0031	4658	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0032	4659	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0033	4658	1	0	0	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0034	4657	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0035	4658	1	0	0	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0036	4658	1	0	0	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	t0037	4658	1	0	0	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH2_chr12_111761933_111822532	0/0	t0001	8009	48	0	5	41	0	2	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	1/1	t0002	8008	37	7	16	8	1	3	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0003	8008	21	7	1	12	0	1	copy fasta	ALDH2	chr12	111761933	111822532