JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABBR2_chr9_98283109_98713935	0/0	t0034	2675	1	0	0	1	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0035	2675	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0036	2675	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0037	2675	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0038	2671	1	0	0	0	1	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0039	2674	1	0	0	0	0	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0040	2673	1	0	0	0	0	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0041	2672	1	0	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0042	2671	1	0	0	0	0	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0043	2671	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0044	2670	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0045	2672	1	0	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0046	2671	1	0	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0047	2673	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0048	2672	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	t0049	2673	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABPA_chr21_25729972_25777460	1/0	t0001	3862	165	24	23	91	6	20	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/1	t0002	3861	116	17	24	54	6	14	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0003	3862	15	2	1	12	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0004	3862	9	9	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0005	3862	8	0	0	8	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0006	3862	8	7	1	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0007	3862	5	5	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0008	3861	5	0	3	0	0	2	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0009	3862	5	5	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0010	3857	5	5	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0011	3862	5	5	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0012	3862	4	4	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0013	3862	3	2	1	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0014	3862	3	2	1	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0015	3862	2	2	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0016	3862	2	0	0	2	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0017	3862	1	1	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0018	3861	1	0	1	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0019	3861	1	0	1	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0020	3862	1	0	0	0	1	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0021	3861	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0022	3861	1	0	0	0	1	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0023	3862	1	0	1	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0024	3861	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0025	3861	1	1	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0026	3862	1	0	1	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0027	3862	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0028	3861	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0029	3862	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0030	3861	1	1	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0031	3862	1	1	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	t0032	3862	1	1	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPB1_chr15_50270389_50360198	0/0	t0001	3458	135	15	15	87	2	16	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0002	3458	73	12	6	49	0	6	copy fasta	GABPB1	chr15	50270389	50360198