JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABPB1_chr15_50270389_50360198	0/0	t0003	3456	54	8	21	14	1	10	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0004	3456	47	15	20	4	3	5	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0005	3457	23	23	0	0	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0006	3457	10	0	8	1	0	1	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0007	3459	4	4	0	0	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0008	3458	3	1	0	0	0	2	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0009	3458	3	0	2	0	0	1	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0010	3457	2	0	0	0	0	2	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0011	3458	2	2	0	0	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0012	3441	1	0	1	0	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0013	3458	1	0	0	1	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0014	3459	1	0	1	0	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0015	3458	1	0	0	0	0	1	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0016	3458	1	0	0	1	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0017	3458	1	0	0	1	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0018	3459	1	1	0	0	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0019	3456	1	0	0	1	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0020	3460	1	1	0	0	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB1_chr15_50270389_50360198	0/0	t0021	3458	1	0	0	1	0	0	copy fasta	GABPB1	chr15	50270389	50360198
GABPB2_chr1_151065761_151130542	0/1	t0001	7442	41	7	10	18	0	5	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0002	7443	31	1	6	19	2	3	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0003	7461	18	7	2	2	4	3	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0004	7461	13	0	4	9	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0005	7462	10	0	4	3	3	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0006	7425	10	10	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0007	7424	8	0	6	0	1	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0008	7462	8	8	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0009	7461	6	6	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0010	7447	5	0	1	1	1	2	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0011	7442	5	0	0	4	0	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0012	7442	4	4	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0013	7448	4	4	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0014	7451	3	2	1	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0015	7443	3	0	3	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0016	7458	3	0	0	0	1	2	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0017	7447	3	3	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0018	7438	3	0	1	0	2	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0019	7443	3	0	1	1	0	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0020	7461	2	2	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0021	7462	2	0	0	2	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0022	7462	2	2	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0023	7443	2	0	1	0	0	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0024	7443	2	0	0	0	0	2	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0025	7438	2	0	0	0	0	2	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0026	7448	2	2	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0027	7443	2	1	0	1	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0028	7442	2	2	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0029	7444	2	0	1	0	0	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0030	7443	2	0	1	1	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0031	7443	2	0	0	2	0	0	copy fasta	GABPB2	chr1	151065761	151130542