JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABPB2_chr1_151065761_151130542	0/0	t0082	7442	1	0	0	0	0	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0083	7437	1	0	0	0	1	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0084	7443	1	0	1	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0085	7444	1	0	0	0	0	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0086	7443	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0087	7442	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0088	7447	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	t0089	7461	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABRA1_chr5_161843120_161904971	0/1	t0001	2868	170	28	31	89	6	15	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0002	2868	67	2	15	38	4	8	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0003	2868	31	6	5	12	0	8	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0004	2868	30	0	1	29	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	1/0	t0005	2868	28	21	2	1	1	2	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0006	2867	14	5	3	4	1	1	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0007	2868	9	8	0	0	0	1	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0008	2868	5	5	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0009	2867	4	4	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0010	2868	3	0	1	0	2	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0011	2868	3	0	0	3	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0012	2868	3	2	1	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0013	2868	3	0	0	3	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0014	2868	3	0	0	3	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0015	2868	2	2	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0016	2868	2	2	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0017	2868	2	0	0	2	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0018	2868	1	0	1	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0019	2868	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0020	2868	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0021	2867	1	0	0	0	0	1	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0022	2867	1	0	0	0	0	1	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0023	2868	1	0	0	0	0	1	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0024	2868	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0025	2868	1	0	0	1	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0026	2868	1	0	0	1	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0027	2868	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0028	2868	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0029	2868	1	0	0	1	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0030	2868	1	0	0	1	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0031	2868	1	0	0	1	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	t0032	2867	1	0	0	1	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA2_chr4_46238548_46395128	0/0	t0001	7165	4	4	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0002	7177	4	0	2	1	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0003	7170	4	0	1	3	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0004	7176	4	0	1	2	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0005	7168	3	2	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0006	7174	3	1	1	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0007	7179	3	2	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0008	7175	3	1	0	1	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0009	7181	3	2	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0010	7183	3	0	2	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128