JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRA2_chr4_46238548_46395128	0/0	t0011	7180	3	0	1	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0012	7168	3	0	0	2	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/1	t0013	7170	3	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0014	7172	3	0	1	1	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0015	7170	2	0	1	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0016	7172	2	1	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0017	7174	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0018	7173	2	2	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0019	7171	2	1	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0020	7164	2	2	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0021	7175	2	1	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0022	7181	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0023	7177	2	1	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0024	7185	2	1	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0025	7191	2	2	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0026	7183	2	1	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0027	7175	2	2	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0028	7171	2	2	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0029	7193	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0030	7181	2	2	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0031	7178	2	0	0	0	2	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0032	7172	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0033	7180	2	0	1	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0034	7180	2	0	0	0	1	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0035	7184	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0036	7166	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0037	7180	2	0	0	1	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0038	7168	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0039	7172	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0040	7174	2	0	0	2	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0041	7159	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0042	7158	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0043	7175	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0044	7173	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0045	7180	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0046	7162	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0047	7178	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0048	7186	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0049	7186	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0050	7194	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0051	7176	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0052	7172	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0053	7190	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0054	7194	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0055	7184	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0056	7178	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0057	7176	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0058	7178	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0059	7180	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0060	7180	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128