JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRA2_chr4_46238548_46395128	0/0	t0061	7190	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0062	7182	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0063	7183	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0064	7184	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0065	7184	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0066	7210	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0067	7190	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0068	7190	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0069	7194	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0070	7197	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0071	7136	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0072	7136	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0073	7142	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0074	7171	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0075	7171	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0076	7169	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0077	7159	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0078	7176	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0079	7166	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0080	7169	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0081	7153	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0082	7175	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0083	7173	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0084	7173	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0085	7163	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0086	7155	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0087	7176	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0088	7172	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0089	7156	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0090	7156	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0091	7177	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0092	7165	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0093	7177	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0094	7157	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0095	7160	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0096	7172	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0097	7185	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0098	7173	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0099	7167	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0100	7167	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0101	7159	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0102	7187	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0103	7175	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0104	7171	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0105	7161	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0106	7189	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0107	7181	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0108	7175	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0109	7163	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0110	7185	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128