JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRA2_chr4_46238548_46395128	0/0	t0111	7183	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0112	7177	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0113	7179	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0114	7173	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	1/0	t0115	7165	1	0	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0116	7165	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0117	7189	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0118	7189	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0119	7179	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0120	7167	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0121	7191	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0122	7187	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0123	7183	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0124	7169	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0125	7173	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0126	7195	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0127	7189	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0128	7179	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0129	7193	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0130	7181	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0131	7173	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0132	7178	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0133	7191	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0134	7187	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0135	7185	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0136	7192	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0137	7181	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0138	7197	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0139	7197	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0140	7197	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0141	7157	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0142	7153	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0143	7173	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0144	7181	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0145	7154	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0146	7170	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0147	7168	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0148	7162	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0149	7155	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0150	7178	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0151	7178	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0152	7176	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0153	7164	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0154	7174	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0155	7172	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0156	7158	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0157	7182	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0158	7178	1	0	0	0	1	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0159	7188	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0160	7174	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128