JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRA2_chr4_46238548_46395128	0/0	t0161	7164	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0162	7164	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0163	7164	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0164	7186	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0165	7184	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0166	7166	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0167	7166	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0168	7168	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0169	7194	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0170	7188	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0171	7186	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0172	7184	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0173	7172	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0174	7194	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0175	7192	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0176	7190	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0177	7184	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0178	7186	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0179	7187	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0180	7173	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0181	7173	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0182	7173	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0183	7175	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0184	7196	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0185	7176	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0186	7176	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0187	7178	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0188	7178	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0189	7198	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0190	7178	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0191	7178	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0192	7199	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0193	7180	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0194	7195	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0195	7202	1	0	0	0	0	1	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0196	7182	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0197	7192	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0198	7208	1	0	0	1	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0199	7182	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	t0200	7155	1	1	0	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA3_chrX_152161234_152456315	0/1	t0001	2191	93	25	22	28	5	12	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	1/0	t0002	2191	75	17	8	43	0	6	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0003	2191	7	6	1	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0004	2185	6	0	0	6	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0005	2191	3	3	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0006	2191	3	3	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0007	2191	3	1	1	0	1	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0008	2191	2	2	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0009	2191	2	0	0	2	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0010	2191	2	2	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315