JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRA3_chrX_152161234_152456315	0/0	t0011	2188	2	2	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0012	2191	1	0	0	1	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0013	2191	1	1	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0014	2192	1	1	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0015	2191	1	1	0	0	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0016	2185	1	0	0	1	0	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA3_chrX_152161234_152456315	0/0	t0017	2191	1	0	0	0	1	0	copy fasta	GABRA3	chrX	152161234	152456315
GABRA4_chr4_46913900_46998581	0/0	t0001	9477	49	2	11	33	0	3	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0002	9473	37	6	7	23	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0003	9480	29	6	7	14	2	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0004	9470	19	0	3	14	1	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0005	9474	16	1	2	13	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/1	t0006	9471	15	0	0	14	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0007	9483	14	7	2	2	2	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0008	9474	14	7	0	0	1	6	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0009	9476	12	5	2	3	1	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0010	9477	12	0	3	9	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0011	9486	11	3	1	5	0	2	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0012	9477	9	2	1	4	0	2	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0013	9471	8	2	0	6	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0014	9471	8	0	4	4	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0015	9480	7	7	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0016	9473	6	0	0	6	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0017	9479	4	1	1	2	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0018	9477	4	0	3	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0019	9489	3	2	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0020	9483	3	3	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0021	9480	3	0	1	2	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0022	9474	3	0	1	1	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0023	9480	2	0	0	2	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0024	9486	2	2	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	1/0	t0025	9483	2	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0026	9477	2	2	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0027	9474	2	0	0	2	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0028	9476	2	0	0	0	1	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0029	9473	2	0	0	2	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0030	9468	2	2	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0031	9477	2	0	0	2	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0032	9471	2	0	0	0	2	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0033	9477	2	0	1	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0034	9471	2	0	2	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0035	9470	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0036	9473	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0037	9477	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0038	9480	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0039	9477	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0040	9477	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0041	9486	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0042	9480	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0043	9483	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581