JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRA4_chr4_46913900_46998581	0/0	t0044	9483	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0045	9480	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0046	9480	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0047	9480	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0048	9480	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0049	9480	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0050	9477	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0051	9497	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0052	9471	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0053	9483	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0054	9483	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0055	9480	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0056	9477	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0057	9477	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0058	9482	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0059	9473	1	0	0	0	1	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0060	9473	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0061	9473	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0062	9473	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0063	9473	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0064	9473	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0065	9473	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0066	9476	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0067	9467	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0068	9464	1	0	0	0	1	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0069	9474	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0070	9480	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0071	9474	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0072	9476	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0073	9473	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0074	9480	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0075	9486	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0076	9483	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0077	9483	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0078	9480	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0079	9483	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0080	9477	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0081	9480	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0082	9480	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0083	9477	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0084	9474	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0085	9474	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0086	9468	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0087	9480	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0088	9474	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0089	9477	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0090	9486	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0091	9483	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0092	9474	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	t0093	9474	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581