Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH2_chr12_111761933_111822532	0/0	t0004	8009	15	1	6	8	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0005	8009	11	0	1	7	0	3	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0006	8009	10	4	2	2	0	2	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0007	8009	9	0	1	2	2	4	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0008	8008	7	0	0	7	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0009	8008	7	0	0	7	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0010	8009	6	0	3	0	0	3	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0011	8010	6	4	2	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0012	8008	6	4	1	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0013	8008	6	0	0	6	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0014	8006	6	6	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0015	8009	4	0	0	4	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0016	8010	4	0	1	2	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0017	8007	3	3	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0018	8008	3	0	0	1	0	2	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0019	8009	3	3	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0020	8009	3	0	0	3	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0021	8009	3	2	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0022	8007	3	0	0	3	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0023	8006	3	3	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0024	8006	3	1	1	0	1	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0025	8007	2	2	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0026	8010	2	2	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0027	8009	2	0	0	0	0	2	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0028	8009	2	0	2	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0029	8010	2	2	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0030	8010	2	2	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0031	8009	2	0	0	2	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0032	8008	2	0	0	2	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0033	8006	2	0	0	2	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0034	8009	2	2	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0035	8008	2	2	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0036	8009	2	0	0	2	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0037	8009	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0038	8008	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0039	8008	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0040	8007	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0041	8008	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0042	8008	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0043	8008	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0044	8011	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0045	8009	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0046	8010	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0047	8009	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0048	8010	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0049	8012	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0050	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0051	8008	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0052	8009	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0053	8009	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532