JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRA4_chr4_46913900_46998581	0/0	t0094	9477	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA5_chr15_26862062_26954208	1/1	t0001	1165	362	82	58	164	12	44	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	t0002	1165	5	3	2	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	t0003	1165	4	4	0	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	t0004	1165	1	0	0	1	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	t0005	1165	1	1	0	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	t0006	1165	1	0	0	1	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	t0007	1165	1	1	0	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	t0008	1165	1	1	0	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA6_chr5_161680721_161707592	1/0	t0001	1089	236	47	38	119	4	27	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/1	t0002	1089	183	44	36	77	10	15	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	t0003	1089	1	1	0	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	t0004	1089	1	0	0	0	0	1	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	t0005	1089	1	0	0	0	0	1	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	t0006	1089	1	0	1	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	t0007	1089	1	0	1	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592
GABRB1_chr4_47026567_47431447	1/1	t0001	515	57	0	14	25	2	14	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0002	514	26	14	1	9	0	2	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0003	510	17	16	1	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0004	517	17	4	1	8	0	4	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0005	514	14	9	4	0	0	1	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0006	513	8	8	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0007	517	5	4	0	1	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0008	513	4	4	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0009	515	4	0	1	0	2	1	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0010	516	3	2	0	1	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0011	515	2	0	0	0	0	2	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	t0012	516	1	1	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB2_chr5_161283436_161551725	0/1	t0001	5728	73	11	18	38	1	4	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0002	5730	22	8	0	13	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0003	5729	14	0	6	7	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0004	5727	13	0	2	7	1	3	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0005	5727	13	0	2	11	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0006	5736	10	3	2	4	1	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0007	5725	9	0	0	9	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0008	5728	9	7	2	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0009	5731	7	1	0	6	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0010	5731	7	7	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0011	5735	5	2	3	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0012	5734	5	0	4	0	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0013	5737	4	4	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0014	5736	4	4	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	1/0	t0015	5728	4	0	1	0	0	2	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0016	5730	4	0	1	2	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0017	5725	4	0	2	0	2	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0018	5725	3	0	0	3	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0019	5728	3	1	1	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0020	5727	3	2	0	0	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0021	5727	3	0	3	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0022	5725	3	0	0	3	0	0	copy fasta	GABRB2	chr5	161283436	161551725