JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRB2_chr5_161283436_161551725	0/0	t0023	5737	2	2	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0024	5732	2	0	0	2	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0025	5735	2	2	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0026	5726	2	0	0	2	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0027	5729	2	2	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0028	5727	2	0	2	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0029	5729	2	0	0	2	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0030	5728	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0031	5738	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0032	5738	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0033	5719	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0034	5736	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0035	5725	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0036	5737	1	0	1	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0037	5736	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0038	5735	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0039	5725	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0040	5728	1	0	0	0	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0041	5728	1	0	1	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0042	5728	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0043	5738	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0044	5737	1	0	0	0	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0045	5735	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0046	5728	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0047	5729	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0048	5728	1	0	0	0	1	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0049	5732	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0050	5728	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0051	5727	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0052	5729	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0053	5730	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0054	5728	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0055	5726	1	0	0	1	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0056	5727	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0057	5729	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0058	5728	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	t0059	5728	1	0	1	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB3_chr15_26538552_26778066	0/0	t0001	4343	45	3	8	23	4	7	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0002	4343	45	10	9	15	6	5	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/1	t0003	4345	20	13	1	4	1	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0004	4341	19	1	7	3	1	7	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0005	4341	10	9	1	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0006	4341	7	5	2	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0007	4341	5	4	1	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0008	4345	5	5	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0009	4343	4	0	0	2	0	2	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0010	4351	4	4	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0011	4343	3	3	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0012	4343	3	0	0	3	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0013	4345	3	0	0	1	0	2	copy fasta	GABRB3	chr15	26538552	26778066