JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRB3_chr15_26538552_26778066	0/0	t0014	4344	3	0	2	0	1	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	1/0	t0015	4346	3	1	0	0	0	1	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0016	4346	3	2	0	0	1	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0017	4341	2	2	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0018	4343	2	2	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0019	4341	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0020	4339	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0021	4343	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0022	4339	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0023	4339	1	0	0	1	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0024	4341	1	0	0	0	0	1	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0025	4343	1	0	0	0	0	1	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0026	4343	1	0	0	0	0	1	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0027	4345	1	0	1	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0028	4345	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0029	4343	1	0	0	0	0	1	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0030	4364	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0031	4343	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0032	4345	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0033	4344	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0034	4346	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0035	4348	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	t0036	4346	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRD_chr1_2014345_2035758	1/1	t0001	556	345	81	71	131	16	44	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	t0002	556	11	6	0	5	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	t0003	556	3	0	0	3	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	t0004	556	3	0	3	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	t0005	556	1	0	0	1	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	t0006	556	1	1	0	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRE_chrX_151948124_151979676	1/0	t0001	1629	253	32	41	145	9	25	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/1	t0002	1629	20	6	5	0	2	6	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0003	1629	13	13	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0004	1629	8	0	4	0	2	2	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0005	1629	6	6	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0006	1629	5	4	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0007	1629	3	3	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0008	1629	3	3	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0009	1629	2	2	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0010	1630	2	1	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0011	1629	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0012	1629	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0013	1629	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0014	1629	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0015	1629	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0016	1629	1	0	0	0	0	1	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0017	1630	1	0	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0018	1628	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0019	1629	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0020	1629	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	t0021	1629	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676