JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRG1_chr4_46030769_46129054	1/0	t0001	5361	151	20	29	74	5	22	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/1	t0002	5361	66	16	13	22	4	10	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0003	5361	22	0	5	16	1	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0004	5361	16	16	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0005	5361	9	0	6	0	1	2	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0006	5361	7	7	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0007	5361	6	6	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0008	5361	3	3	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0009	5361	3	3	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0010	5361	3	0	0	3	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0011	5356	2	2	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0012	5361	2	2	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0013	5361	2	0	0	2	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0014	5361	2	2	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0015	5361	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0016	5361	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0017	5361	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0018	5356	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0019	5361	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0020	5361	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0021	5361	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0022	5361	1	0	1	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0023	5361	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0024	5361	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0025	5361	1	0	0	0	1	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0026	5361	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0027	5361	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	t0028	5361	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG2_chr5_162062773_162160526	1/0	t0001	2386	112	25	21	41	6	18	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0002	2384	100	18	9	64	3	6	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0003	2386	56	3	6	37	1	9	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0004	2386	16	15	1	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0005	2386	10	8	2	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0006	2386	6	6	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/1	t0007	2386	6	0	1	3	1	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0008	2384	3	0	0	3	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0009	2384	3	0	0	3	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0010	2386	3	3	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0011	2386	3	1	0	2	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0012	2386	2	0	2	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0013	2384	2	0	0	0	1	1	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0014	2386	2	2	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0015	2386	1	1	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0016	2386	1	0	0	1	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0017	2386	1	1	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	t0018	2386	1	1	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG3_chr15_26966181_27546984	0/0	t0001	9459	36	11	11	0	4	10	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0002	9447	5	4	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0003	9444	4	3	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0004	9459	3	3	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984