JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRG3_chr15_26966181_27546984	0/0	t0005	9455	3	3	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0006	9442	3	3	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0007	9455	2	0	1	0	0	1	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0008	9447	2	1	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0009	9458	2	2	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0010	9448	2	2	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0011	9459	2	2	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0012	9460	2	0	0	2	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0013	9459	2	1	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0014	9463	1	0	0	0	0	1	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0015	9459	1	0	0	0	0	1	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0016	9439	1	0	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0017	9458	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0018	9459	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0019	9454	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0020	9459	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0021	9459	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0022	9454	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0023	9451	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0024	9454	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0025	9459	1	0	0	0	1	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0026	9463	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0027	9459	1	0	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0028	9459	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0029	9455	1	0	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0030	9456	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0031	9459	1	0	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0032	9446	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0033	9439	1	0	0	0	1	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0034	9459	1	0	0	0	0	1	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0035	9460	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0036	9455	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	t0037	9454	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRP_chr5_170778725_170819047	0/0	t0001	1982	105	9	27	50	5	14	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0002	1982	52	7	10	28	0	7	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0003	1982	41	7	9	14	4	7	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	1/1	t0004	1982	26	8	11	0	1	4	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0005	1982	24	0	0	22	1	1	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0006	1982	18	6	2	3	2	5	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0007	1982	12	7	3	1	0	1	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0008	1982	8	0	0	8	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0009	1982	7	6	1	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0010	1982	7	7	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0011	1982	6	2	4	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0012	1982	5	0	0	0	0	5	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0013	1982	5	5	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0014	1982	5	3	1	0	0	1	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0015	1982	4	0	3	0	1	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0016	1982	3	3	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0017	1982	3	0	0	3	0	0	copy fasta	GABRP	chr5	170778725	170819047