JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRP_chr5_170778725_170819047	0/0	t0018	1982	2	2	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0019	1982	2	2	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0020	1982	2	0	0	2	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0021	1982	2	2	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0022	1982	2	2	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0023	1982	2	2	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0024	1982	2	2	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0025	1982	2	0	0	2	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0026	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0027	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0028	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0029	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0030	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0031	1982	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0032	1982	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0033	1982	1	0	0	0	0	1	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0034	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0035	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0036	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0037	1982	1	0	1	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0038	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0039	1982	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	t0040	1982	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRQ_chrX_152632895_152662542	0/0	t0001	4572	134	37	10	68	1	18	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	1/1	t0002	4570	101	16	34	38	4	7	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0003	4570	16	0	7	8	1	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0004	4572	11	11	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0005	4572	4	4	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0006	4572	4	4	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0007	4572	4	0	0	4	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0008	4572	2	0	0	2	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0009	4572	2	2	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0010	4572	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0011	4572	1	0	1	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0012	4572	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0013	4572	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0014	4570	1	0	1	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0015	4572	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0016	4572	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0017	4572	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0018	4572	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0019	4572	1	0	1	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0020	4572	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0021	4570	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0022	4570	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0023	4569	1	0	0	0	1	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0024	4572	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0025	4569	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0026	4570	1	0	0	0	0	1	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0027	4572	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542