JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRQ_chrX_152632895_152662542	0/0	t0028	4572	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	t0029	4572	1	0	1	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRR1_chr6_89172504_89222358	1/0	t0001	1303	13	0	2	8	0	2	copy fasta	GABRR1	chr6	89172504	89222358
GABRR1_chr6_89172504_89222358	0/0	t0002	1303	12	0	0	10	0	2	copy fasta	GABRR1	chr6	89172504	89222358
GABRR2_chr6_89249464_89320299	0/0	t0001	3341	124	6	16	85	3	14	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/1	t0002	3341	61	23	6	23	2	6	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	1/0	t0003	3341	58	6	17	19	3	12	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0004	3341	31	24	3	4	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0005	3341	23	4	10	0	4	5	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0006	3341	21	9	6	1	2	3	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0007	3341	8	0	2	6	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0008	3341	5	5	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0009	3341	3	3	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0010	3339	3	0	1	0	2	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0011	3341	3	3	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0012	3341	3	0	0	3	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0013	3341	3	2	1	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0014	3341	2	2	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0015	3341	2	0	1	0	0	1	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0016	3341	2	0	2	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0017	3341	2	2	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0018	3341	1	0	1	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0019	3341	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0020	3341	1	0	0	1	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0021	3341	1	0	0	1	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0022	3341	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0023	3341	1	0	0	1	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0024	3341	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0025	3341	1	0	0	0	0	1	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0026	3341	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0027	3341	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0028	3341	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	t0029	3341	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR3_chr3_97980102_98040315	0/0	t0001	1708	76	13	8	42	4	9	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/1	t0002	1708	70	10	20	29	5	5	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0003	1708	67	10	12	33	3	9	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0004	1708	66	10	10	38	0	8	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0005	1708	30	4	9	9	2	6	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0006	1708	17	2	3	7	2	3	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0007	1708	10	7	3	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0008	1708	7	7	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0009	1708	7	6	1	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0010	1710	5	5	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	1/0	t0011	1710	4	3	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0012	1708	3	0	0	0	0	3	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0013	1708	3	3	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0014	1708	2	0	1	0	0	1	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0015	1710	2	0	2	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0016	1710	2	2	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0017	1708	2	0	2	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315