JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GABRR3_chr3_97980102_98040315	0/0	t0018	1708	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0019	1708	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0020	1708	1	0	0	0	0	1	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0021	1708	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0022	1708	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0023	1708	1	0	1	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0024	1710	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0025	1708	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	t0026	1708	1	0	0	0	0	1	copy fasta	GABRR3	chr3	97980102	98040315
GAD1_chr2_170811887_170866151	0/0	t0001	1495	209	63	37	80	10	19	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	1/0	t0002	1495	89	5	10	58	2	13	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/1	t0003	1495	75	0	12	50	3	9	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0004	1495	7	7	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0005	1495	7	7	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0006	1495	6	6	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0007	1495	4	0	4	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0008	1495	4	0	3	0	0	1	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0009	1495	2	0	0	2	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0010	1495	1	0	1	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0011	1495	1	0	0	0	1	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0012	1495	1	0	1	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0013	1495	1	1	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0014	1495	1	1	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0015	1495	1	1	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0016	1495	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0017	1495	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	t0018	1495	1	1	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD2_chr10_26211774_26309558	0/0	t0001	3632	83	15	16	43	2	7	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	1/0	t0002	3634	72	11	19	25	4	12	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0003	3634	42	0	7	26	5	4	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0004	3853	16	0	5	10	0	1	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0005	3637	14	13	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0006	3634	11	0	7	3	0	1	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0007	3675	8	7	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0008	3671	7	6	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0009	3638	6	5	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0010	3638	4	4	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0011	3638	4	3	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0012	3634	3	3	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0013	3638	2	2	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0014	3681	2	2	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0015	3632	2	1	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0016	3638	2	2	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0017	3633	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0018	3634	1	0	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0019	3638	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0020	3633	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0021	3634	1	0	0	0	0	1	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0022	3634	1	0	0	1	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0023	3638	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558