JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAD2_chr10_26211774_26309558	0/0	t0024	3632	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0025	3646	1	0	0	1	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0026	3634	1	0	0	1	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0027	3568	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0028	3633	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0029	3800	1	0	0	0	1	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/1	t0030	3853	1	0	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0031	3634	1	0	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	t0032	3631	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GADD45A_chr1_67680201_67693334	1/1	t0001	855	384	81	63	187	16	35	copy fasta	GADD45A	chr1	67680201	67693334
GADD45A_chr1_67680201_67693334	0/0	t0002	855	14	13	1	0	0	0	copy fasta	GADD45A	chr1	67680201	67693334
GADD45A_chr1_67680201_67693334	0/0	t0003	855	4	4	0	0	0	0	copy fasta	GADD45A	chr1	67680201	67693334
GADD45A_chr1_67680201_67693334	0/0	t0004	855	1	0	0	1	0	0	copy fasta	GADD45A	chr1	67680201	67693334
GADD45A_chr1_67680201_67693334	0/0	t0005	855	1	0	0	0	0	1	copy fasta	GADD45A	chr1	67680201	67693334
GADD45B_chr19_2471127_2483257	1/0	t0001	889	169	47	35	76	3	7	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/1	t0002	890	122	9	18	81	3	10	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0003	889	103	21	25	25	8	24	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0004	889	54	9	9	28	2	6	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0005	889	6	6	0	0	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0006	889	1	0	1	0	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0007	890	1	1	0	0	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0008	889	1	0	0	0	0	1	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0009	889	1	0	0	1	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0010	889	1	1	0	0	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	t0011	889	1	0	0	1	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45GIP1_chr19_12948119_12962223	1/1	t0001	1101	303	66	55	131	9	40	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0002	1101	29	11	6	9	3	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0003	1101	8	0	5	0	3	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0004	1101	6	4	2	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0005	1102	6	0	0	6	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0006	1101	5	4	1	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0007	1101	2	2	0	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0008	1101	2	2	0	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0009	1101	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0010	1101	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0011	1101	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0012	1101	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0013	1101	1	0	1	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0014	1101	1	0	1	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0015	1101	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0016	1101	1	0	0	0	1	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0017	1101	1	0	1	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0018	1101	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	t0019	1101	1	1	0	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45G_chr9_89600012_89611555	1/1	t0001	587	346	76	73	142	12	41	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	t0002	587	86	17	2	60	0	7	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	t0003	587	6	0	4	0	2	0	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	t0004	587	5	0	5	0	0	0	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	t0005	587	5	0	0	5	0	0	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	t0006	587	1	0	0	1	0	0	copy fasta	GADD45G	chr9	89600012	89611555