JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GADD45G_chr9_89600012_89611555	0/0	t0007	587	1	0	0	1	0	0	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	t0008	587	1	0	0	1	0	0	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	t0009	587	1	1	0	0	0	0	copy fasta	GADD45G	chr9	89600012	89611555
GADL1_chr3_30721197_30899661	1/0	t0001	2093	103	7	28	55	2	10	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/1	t0002	2103	47	5	9	22	1	9	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0003	2105	38	7	0	28	1	2	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0004	2109	15	11	1	0	0	3	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0005	2107	15	14	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0006	2111	11	0	0	11	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0007	2105	7	7	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0008	2109	3	2	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0009	2095	3	0	3	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0010	2093	3	0	1	2	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0011	2095	3	0	3	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0012	2113	2	0	0	2	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0013	2109	2	2	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0014	2105	2	1	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0015	2105	2	0	0	2	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0016	2107	2	0	0	0	0	2	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0017	2093	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0018	2105	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0019	2103	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0020	2105	1	0	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0021	2148	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0022	2109	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0023	2111	1	0	0	0	0	1	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0024	2095	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0025	2111	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0026	2111	1	0	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0027	2109	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0028	2103	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0029	2113	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0030	2093	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0031	2105	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0032	2095	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0033	2095	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0034	2105	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0035	2107	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0036	2105	1	0	0	0	0	1	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0037	2105	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0038	2109	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0039	2093	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	t0040	2105	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GAGE10_chrX_49298646_49324841	0/0	t0001	208	296	67	54	140	11	24	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	t0002	208	4	4	0	0	0	0	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	t0003	208	1	1	0	0	0	0	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	t0004	208	1	0	0	0	0	1	copy fasta	GAGE10	chrX	49298646	49324841
GAGE12D_chrX_49536733_49554094	0/0	t0001	208	33	5	8	15	1	4	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	t0002	208	23	3	8	7	1	4	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	t0003	208	7	1	2	4	0	0	copy fasta	GAGE12D	chrX	49536733	49554094