Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH2_chr12_111761933_111822532	0/0	t0054	8009	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0055	8010	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0056	8010	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0057	8009	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0058	8008	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0059	8012	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0060	8008	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0061	8009	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0062	8010	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0063	8009	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0064	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0065	8008	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0066	8010	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0067	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0068	8008	1	0	0	0	1	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0069	8009	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0070	8007	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0071	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0072	8007	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0073	8010	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0074	8009	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0075	8010	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0076	8011	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0077	8010	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0078	8011	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0079	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0080	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0081	8015	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0082	8010	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0083	8010	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0084	8005	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0085	8007	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0086	8007	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0087	8006	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0088	8005	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0089	8005	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0090	8006	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0091	8006	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0092	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0093	8011	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0094	8009	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0095	8007	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0096	8007	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0097	8009	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0098	8009	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0099	8008	1	0	0	0	1	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0100	8008	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0101	8009	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0102	8007	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0103	8009	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532