JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAGE12D_chrX_49536733_49554094	0/0	t0004	208	7	0	3	3	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	t0005	208	1	1	0	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	t0006	208	1	0	0	1	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12E_chrX_49546289_49563645	0/0	t0001	207	60	24	15	17	1	3	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	t0002	207	33	5	2	18	1	7	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	t0003	207	2	0	0	2	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	t0004	207	1	1	0	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	t0005	207	1	0	0	1	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	t0006	207	1	0	1	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	t0007	207	1	1	0	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	t0008	206	1	1	0	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12F_chrX_49555842_49573205	0/0	t0001	208	52	18	8	19	1	6	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0002	208	33	3	4	18	2	6	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0003	208	3	3	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0004	208	2	1	0	1	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0005	208	2	0	0	2	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0006	208	2	0	0	1	0	1	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0007	207	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0008	209	1	0	0	1	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0009	208	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0010	209	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	t0011	208	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12G_chrX_49565400_49582754	0/0	t0001	208	56	10	8	33	1	4	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0002	208	17	14	0	2	0	1	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0003	208	13	4	2	6	1	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0004	208	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0005	209	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0006	209	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0007	208	1	1	0	0	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0008	209	1	0	1	0	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0009	209	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0010	208	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0011	207	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	t0012	209	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12H_chrX_49574949_49592301	0/0	t0001	208	56	15	8	25	4	4	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0002	208	26	5	7	8	2	4	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0003	208	15	3	5	7	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0004	208	8	0	1	5	0	2	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0005	208	5	2	0	2	1	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0006	209	1	0	1	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0007	209	1	0	1	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0008	211	1	1	0	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0009	208	1	0	1	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0010	210	1	1	0	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	t0011	209	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12J_chrX_49317037_49334384	1/0	t0001	208	97	23	19	43	3	8	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	t0002	208	91	3	20	48	6	14	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	t0003	208	2	0	0	0	1	1	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	t0004	208	2	1	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	t0005	208	1	1	0	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384