JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAK_chr4_844277_937316	0/0	t0009	526	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0010	526	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0011	526	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAL3ST1_chr22_30549635_30579665	1/1	t0001	638	442	88	86	198	18	50	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	t0002	638	3	3	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	t0003	638	2	2	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	t0004	621	1	1	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	t0005	638	1	0	0	1	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	t0006	638	1	0	0	1	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	t0007	638	1	0	0	1	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	t0008	655	1	0	0	1	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST2_chr2_241771822_241809287	1/1	t0001	256	211	53	37	81	11	27	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	t0002	256	103	37	17	37	5	7	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST3_chr11_66035765_66054161	0/1	t0001	2006	133	16	29	62	7	18	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0002	2006	100	22	19	51	3	5	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0003	2006	48	9	10	21	2	6	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	1/0	t0004	2006	44	22	2	19	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0005	2006	33	6	3	24	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0006	2006	6	6	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0007	2006	4	4	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0008	2006	4	4	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0009	2006	3	0	1	2	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0010	2006	3	3	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0011	2006	3	0	0	3	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0012	2006	2	2	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0013	2006	2	0	1	0	1	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0014	2006	1	0	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0015	2006	1	0	0	0	0	1	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0016	2006	1	0	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0017	2006	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0018	2006	1	0	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0019	2006	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0020	2006	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0021	2006	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	t0022	2006	1	0	0	0	1	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST4_chr7_100154244_100173617	1/1	t0001	945	342	65	67	145	15	48	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	t0002	945	17	1	2	14	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	t0003	946	16	15	1	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	t0004	945	15	0	0	15	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	t0005	944	9	1	0	5	1	2	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	t0006	944	1	0	0	1	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	t0007	945	1	0	0	1	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	t0008	945	1	0	0	1	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GALC_chr14_87928014_87998182	0/1	t0001	1737	163	55	32	53	5	17	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0002	1734	143	18	20	87	6	12	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	1/0	t0003	1737	22	7	1	13	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0004	1734	15	1	6	0	5	3	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0005	1734	10	1	9	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0006	1734	5	0	1	0	0	4	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0007	1737	5	5	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182