JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALC_chr14_87928014_87998182	0/0	t0008	1734	4	4	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0009	1734	1	0	1	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0010	1737	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	t0011	1737	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALE_chr1_23790599_23805754	1/1	t0001	470	402	92	83	170	18	37	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	t0002	470	4	0	0	4	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	t0003	470	1	0	0	1	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	t0004	470	1	0	0	1	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	t0005	470	1	0	0	0	0	1	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	t0006	470	1	0	1	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALK1_chr17_75752894_75770192	1/1	t0001	219	451	95	86	206	18	44	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	t0002	219	1	1	0	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK2_chr15_49165247_49336882	0/0	t0001	3797	74	8	16	39	2	9	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0002	3799	62	22	11	20	3	6	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0003	3799	28	2	11	2	3	10	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0004	3799	23	4	1	11	0	7	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0005	3799	21	0	0	19	1	1	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0006	3800	21	0	2	18	0	1	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0007	3800	12	0	1	9	0	2	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0008	3797	11	11	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0009	3800	10	1	1	3	1	4	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0010	3799	9	7	1	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0011	3799	6	5	1	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0012	3797	5	3	2	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0013	3796	5	1	2	0	2	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0014	3797	4	0	0	0	0	4	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0015	3799	3	3	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/1	t0016	3798	3	2	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0017	3799	3	0	0	0	3	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0018	3800	3	0	0	0	0	3	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0019	3799	3	2	1	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0020	3800	2	0	1	0	1	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0021	3799	2	1	1	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0022	3798	2	0	0	2	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0023	3798	2	0	0	2	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0024	3800	2	1	0	0	0	1	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0025	3798	2	2	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0026	3797	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0027	3797	1	0	1	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0028	3799	1	0	1	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0029	3800	1	0	0	0	0	1	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0030	3799	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0031	3799	1	0	0	0	0	1	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0032	3799	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0033	3800	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0034	3798	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0035	3799	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0036	3798	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0037	3799	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0038	3799	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882