JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALK2_chr15_49165247_49336882	0/0	t0039	3797	1	0	1	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0040	3798	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0041	3797	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0042	3797	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0043	3797	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0044	3796	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0045	3801	1	0	1	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0046	3800	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	1/0	t0047	3800	1	0	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0048	3800	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0049	3801	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0050	3799	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0051	3800	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0052	3798	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0053	3800	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0054	3799	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	t0055	3797	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALM_chr2_38661114_38739765	0/0	t0001	1251	156	15	27	89	3	22	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/1	t0002	1251	47	13	12	14	1	6	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0003	1250	22	9	8	0	2	3	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0004	1251	17	6	0	10	0	1	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0005	1247	13	12	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0006	1251	12	8	1	0	0	3	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0007	1252	5	2	1	2	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0008	1250	5	2	1	1	0	1	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0009	1251	5	5	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0010	1252	4	1	0	3	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0011	1251	4	0	0	4	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0012	1251	4	4	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0013	1251	3	3	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0014	1252	3	3	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0015	1251	3	2	0	0	1	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0016	1251	2	0	0	0	0	2	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0017	1251	2	0	0	0	1	1	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0018	1253	2	2	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0019	1251	2	1	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	1/0	t0020	1249	2	0	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0021	1251	1	0	0	0	0	1	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0022	1251	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0023	1251	1	0	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0024	1250	1	0	0	1	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0025	1251	1	0	0	1	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0026	1252	1	0	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0027	1250	1	0	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0028	1250	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0029	1252	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0030	1251	1	0	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0031	1252	1	0	0	1	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0032	1252	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0033	1247	1	0	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765