JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALM_chr2_38661114_38739765	0/0	t0034	1246	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	t0035	1251	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALNS_chr16_88808734_88861947	1/1	t0001	776	234	56	57	77	12	30	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0002	776	111	5	23	70	4	9	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0003	776	18	7	2	5	1	3	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0004	776	11	11	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0005	776	5	0	0	5	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0006	776	3	3	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0007	776	2	2	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0008	776	2	0	0	2	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0009	776	2	2	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0010	776	2	0	2	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0011	776	2	2	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0012	776	2	2	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0013	776	2	2	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0014	776	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0015	776	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0016	776	1	1	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0017	776	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0018	776	1	0	0	0	1	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0019	776	1	1	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0020	776	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	t0021	776	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNT10_chr5_154185733_154425984	1/0	t0001	4147	34	15	11	0	4	3	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0002	4155	26	0	14	7	1	4	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/1	t0003	4147	25	6	4	4	2	8	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0004	4147	19	9	5	3	0	2	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0005	4147	13	12	1	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0006	4155	12	0	2	6	1	3	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0007	4155	12	0	3	8	1	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0008	4155	11	3	4	0	2	2	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0009	4148	10	9	1	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0010	4155	9	0	0	9	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0011	4155	6	0	1	5	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0012	4156	6	0	2	4	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0013	4148	5	1	2	0	1	1	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0014	4147	4	2	1	0	1	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0015	4155	4	0	1	3	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0016	4147	3	0	3	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0017	4147	2	0	1	0	0	1	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0018	4147	2	2	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0019	4147	2	2	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0020	4147	2	2	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0021	4147	2	2	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0022	4147	2	0	2	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0023	4147	2	2	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0024	4155	2	0	0	2	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0025	4147	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0026	4147	1	0	0	0	0	1	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0027	4147	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984