JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT10_chr5_154185733_154425984	0/0	t0028	4147	1	0	0	0	0	1	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0029	4147	1	0	1	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0030	4147	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0031	4147	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0032	4155	1	0	0	0	0	1	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0033	4155	1	0	0	1	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0034	4155	1	0	0	1	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0035	4155	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0036	4155	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0037	4155	1	0	0	0	1	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0038	4155	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0039	4155	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0040	4155	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0041	4155	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0042	4155	1	0	1	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0043	4155	1	0	0	0	0	1	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0044	4155	1	0	0	1	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	t0045	4147	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT11_chr7_152020674_152127340	0/1	t0001	913	171	34	39	69	8	20	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0002	914	49	8	6	31	0	4	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0003	913	35	32	3	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0004	912	7	7	0	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0005	913	4	4	0	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0006	914	3	0	0	3	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0007	932	3	0	0	3	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0008	913	2	1	1	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0009	913	2	0	0	2	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	1/0	t0010	913	2	0	1	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0011	913	1	0	1	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0012	914	1	0	0	1	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0013	912	1	0	1	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0014	913	1	0	0	1	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0015	913	1	0	0	1	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	t0016	933	1	0	0	1	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT12_chr9_98802670_98855081	1/1	t0001	1019	221	58	38	66	15	42	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0002	1019	72	19	15	36	1	1	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0003	1019	42	8	12	21	0	1	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0004	1019	19	0	2	17	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0005	1019	10	0	0	10	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0006	1019	7	6	1	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0007	1019	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0008	1019	1	1	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0009	1019	1	1	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0010	1019	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	t0011	1019	1	1	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT13_chr2_153866922_154458979	0/0	t0001	3987	20	1	12	2	2	3	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0002	3987	11	0	7	0	2	2	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/1	t0003	3987	11	1	8	0	1	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0004	3987	9	1	0	7	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0005	3987	8	0	0	5	0	3	copy fasta	GALNT13	chr2	153866922	154458979