JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT13_chr2_153866922_154458979	0/0	t0006	3987	8	1	4	1	0	2	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0007	3987	8	0	3	5	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0008	3987	8	1	6	0	1	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0009	3987	7	1	0	6	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0010	3987	7	1	1	5	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0011	3987	6	3	0	1	0	2	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0012	3987	5	1	2	1	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0013	3987	5	0	2	2	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0014	3987	4	0	1	2	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0015	3987	4	0	0	3	1	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0016	3987	4	1	0	3	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0017	3987	4	0	2	1	1	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0018	3987	4	0	0	2	0	2	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0019	3987	4	2	0	0	1	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0020	3987	3	0	0	3	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0021	3987	3	0	3	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0022	3987	3	3	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0023	3987	3	2	0	0	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0024	3987	2	2	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0025	3987	2	1	1	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0026	3987	2	0	0	2	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0027	3987	2	1	0	0	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0028	3987	2	0	1	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0029	3987	2	1	0	0	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0030	3987	2	1	0	0	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0031	3987	2	2	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0032	3987	2	0	0	0	0	2	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0033	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0034	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0035	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0036	3987	1	0	0	0	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0037	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0038	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0039	3987	1	0	0	0	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0040	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0041	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0042	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0043	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0044	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0045	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0046	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0047	3987	1	0	1	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0048	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0049	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0050	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	1/0	t0051	3987	1	0	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0052	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0053	3987	1	0	1	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0054	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0055	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979