JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT13_chr2_153866922_154458979	0/0	t0056	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0057	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0058	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0059	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0060	3987	1	0	1	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0061	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0062	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0063	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0064	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0065	3987	1	0	0	0	1	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0066	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0067	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0068	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0069	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0070	3987	1	0	0	0	0	1	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0071	3987	1	0	0	1	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0072	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0073	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0074	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0075	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0076	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0077	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0078	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	t0079	3987	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT14_chr2_30905467_31143440	1/0	t0001	789	167	58	25	60	6	17	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/1	t0002	798	35	5	21	0	3	5	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	t0003	789	7	7	0	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	t0004	789	6	5	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	t0005	795	5	3	0	2	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	t0006	789	2	0	0	2	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	t0007	792	2	0	1	0	1	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	t0008	789	1	0	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	t0009	789	1	0	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT15_chr3_16169680_16235165	0/0	t0001	3135	72	9	5	49	3	6	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0002	3135	68	4	13	37	2	12	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0003	3137	53	5	13	27	0	8	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0004	3135	38	0	5	26	2	5	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0005	3136	28	6	7	12	1	2	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0006	3135	24	12	9	0	1	2	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0007	3136	14	5	4	0	2	3	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0008	3135	8	8	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0009	3136	8	1	5	0	0	2	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0010	3136	6	4	1	0	0	1	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0011	3134	6	6	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0012	3136	6	1	1	1	3	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/1	t0013	3136	5	0	4	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0014	3137	4	3	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0015	3137	3	0	2	0	1	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0016	3137	3	0	1	1	1	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0017	3135	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165