JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT15_chr3_16169680_16235165	0/0	t0018	3137	2	0	0	2	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0019	3135	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0020	3137	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0021	3136	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0022	3136	2	0	0	2	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0023	3135	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0024	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0025	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0026	3136	1	0	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0027	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0028	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0029	3135	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0030	3135	1	0	0	0	0	1	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0031	3138	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0032	3136	1	0	0	0	0	1	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0033	3135	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0034	3135	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	1/0	t0035	3138	1	0	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0036	3137	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0037	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0038	3136	1	0	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0039	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0040	3137	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0041	3136	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0042	3135	1	0	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0043	3135	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0044	3136	1	0	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0045	3135	1	0	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0046	3134	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0047	3134	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0048	3135	1	0	0	0	0	1	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0049	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0050	3136	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	t0051	3135	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT16_chr14_69255158_69359466	1/0	t0001	2432	161	37	25	68	7	23	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/1	t0002	2432	52	17	9	9	3	13	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0003	2432	33	6	4	21	1	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0004	2432	15	0	6	0	3	6	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0005	2432	5	3	1	0	0	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0006	2432	5	5	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0007	2430	5	5	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0008	2432	4	3	1	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0009	2432	4	2	2	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0010	2432	3	3	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0011	2432	2	2	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0012	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0013	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0014	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0015	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0016	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466