Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH2_chr12_111761933_111822532	0/0	t0104	8006	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0105	8007	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0106	8008	1	0	0	0	0	1	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0107	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0108	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0109	8006	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0110	8010	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0111	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0112	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0113	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0114	8007	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0115	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0116	8005	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0117	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0118	8005	1	0	1	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0119	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0120	8008	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0121	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0122	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0123	8011	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0124	8010	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0125	8008	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0126	8009	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	t0127	8008	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH3A1_chr17_19732989_19753298	1/1	t0001	278	263	67	46	108	11	29	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	t0002	278	124	13	35	57	4	15	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	t0003	278	24	1	3	20	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	t0004	278	6	0	0	5	1	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	t0005	278	3	3	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	t0006	278	2	0	0	2	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	t0007	278	2	0	0	2	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A2_chr17_19643751_19682596	0/0	t0001	2244	128	11	20	77	7	13	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0002	2246	97	12	25	50	2	8	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	1/1	t0003	2246	94	36	22	20	4	10	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0004	2246	14	11	1	0	2	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0005	2246	6	0	0	6	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0006	2246	6	0	0	6	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0007	2246	4	0	0	0	0	4	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0008	2246	3	0	0	3	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0009	2246	2	0	1	0	1	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0010	2246	2	0	0	2	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0011	2244	1	0	0	1	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0012	2246	1	1	0	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0013	2246	1	0	1	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0014	2246	1	1	0	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0015	2244	1	0	1	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0016	2246	1	1	0	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0017	2246	1	0	0	1	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0018	2244	1	0	1	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	t0019	2246	1	1	0	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596