JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT16_chr14_69255158_69359466	0/0	t0017	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0018	2432	1	0	0	1	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0019	2432	1	0	0	1	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0020	2432	1	0	0	1	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0021	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0022	2432	1	0	0	0	0	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0023	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0024	2432	1	0	0	0	0	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0025	2432	1	0	0	1	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0026	2432	1	0	0	0	0	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0027	2432	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	t0028	2378	1	0	0	0	0	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT17_chr7_71127144_71718599	0/0	t0001	2113	9	4	3	0	0	2	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0002	2113	9	7	1	0	1	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0003	2113	9	2	5	0	0	2	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0004	2113	8	3	1	0	2	2	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0005	2113	6	2	2	0	1	1	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0006	2113	4	0	0	3	0	1	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0007	2113	4	0	0	4	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0008	2113	4	3	0	0	0	1	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0009	2113	3	0	1	0	0	2	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0010	2113	3	3	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0011	2113	3	0	1	2	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0012	2113	3	0	2	0	0	1	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0013	2113	2	1	1	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0014	2113	2	0	0	2	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0015	2113	1	0	0	1	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0016	2113	1	0	1	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0017	2113	1	1	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0018	2113	1	1	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0019	2113	1	0	1	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0020	2113	1	0	1	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	t0021	2113	1	1	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT18_chr11_11265877_11627005	1/1	t0001	680	123	31	22	41	9	18	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0002	680	70	30	8	18	2	12	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0003	680	27	6	3	11	2	5	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0004	680	11	2	2	7	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0005	680	5	5	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0006	680	5	1	1	0	1	2	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0007	680	3	1	2	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0008	680	3	2	1	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0009	680	2	0	2	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0010	680	2	0	0	2	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0011	680	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0012	680	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0013	680	1	0	0	0	0	1	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0014	680	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0015	680	1	0	0	1	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0016	680	1	0	0	0	0	1	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0017	680	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005