JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT18_chr11_11265877_11627005	0/0	t0018	680	1	0	0	0	0	1	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	t0019	680	1	0	1	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT1_chr18_35576740_35716834	0/1	t0001	2305	154	54	32	45	7	15	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0002	2305	42	12	7	17	2	4	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0003	2305	31	0	1	25	0	5	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0004	2305	27	4	14	6	3	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0005	2312	10	0	0	10	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0006	2306	7	3	4	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0007	2303	7	7	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0008	2309	6	0	0	6	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0009	2305	5	3	2	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0010	2301	4	0	0	0	0	4	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0011	2305	3	2	1	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0012	2305	3	3	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0013	2305	2	2	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	1/0	t0014	2291	1	0	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0015	2305	1	0	1	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0016	2305	1	1	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0017	2305	1	1	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0018	2305	1	0	0	1	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0019	2305	1	1	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0020	2302	1	1	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0021	2309	1	0	0	1	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	t0022	2308	1	0	0	1	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT2_chr1_230062238_230287122	0/0	t0001	2707	78	13	19	38	1	7	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0002	2708	38	0	3	30	0	5	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0003	2708	26	12	1	13	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	1/0	t0004	2708	17	1	8	0	1	6	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0005	2708	17	1	1	8	3	4	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0006	2708	15	1	7	4	0	3	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0007	2708	13	0	5	3	3	2	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0008	2708	10	10	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0009	2708	10	0	3	1	2	4	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0010	2708	8	1	7	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0011	2707	7	7	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0012	2708	5	5	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0013	2708	5	5	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0014	2708	5	1	1	1	0	2	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0015	2708	4	4	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0016	2708	3	3	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0017	2708	3	0	3	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0018	2708	3	3	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0019	2708	3	3	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0020	2707	2	0	0	2	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0021	2707	2	2	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0022	2708	2	2	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0023	2708	2	2	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0024	2708	2	0	1	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0025	2707	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0026	2707	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122