JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT2_chr1_230062238_230287122	0/0	t0027	2707	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0028	2707	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0029	2707	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0030	2707	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0031	2707	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0032	2707	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0033	2707	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0034	2707	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0035	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0036	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0037	2708	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0038	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0039	2708	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0040	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0041	2708	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0042	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0043	2708	1	0	0	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0044	2708	1	0	0	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0045	2708	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0046	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0047	2708	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0048	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0049	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0050	2708	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0051	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0052	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0053	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0054	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0055	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0056	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0057	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0058	2708	1	0	0	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0059	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0060	2708	1	0	0	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0061	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0062	2708	1	0	0	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0063	2708	1	0	0	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0064	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/1	t0065	2708	1	0	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0066	2708	1	0	0	1	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0067	2708	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	t0068	2708	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT3_chr2_165742588_165799247	1/0	t0001	1535	252	64	46	116	4	21	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/1	t0002	1535	113	16	18	55	5	18	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0003	1535	7	0	3	0	2	2	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0004	1535	4	4	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0005	1535	4	3	0	0	1	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0006	1535	1	1	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0007	1535	1	1	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0008	1535	1	1	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247