JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT6_chr12_51346252_51396406	0/0	t0010	3439	19	0	3	12	1	3	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0011	3435	17	2	7	2	1	5	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0012	3435	16	0	0	16	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0013	3435	14	1	4	9	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0014	3435	9	0	3	4	2	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0015	3435	7	5	2	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0016	3435	7	0	0	7	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0017	3435	4	1	1	2	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0018	3439	4	0	0	4	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0019	3435	4	1	0	1	0	2	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0020	3439	3	2	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0021	3439	2	0	0	2	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0022	3435	2	0	0	2	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0023	3435	2	2	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0024	3435	2	0	0	2	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0025	3439	2	2	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0026	3439	2	2	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0027	3439	2	0	0	2	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0028	3435	2	2	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0029	3435	2	0	0	2	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0030	3435	2	2	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0031	3435	2	2	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0032	3437	2	1	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0033	3436	2	2	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0034	3439	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0035	3434	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0036	3435	1	0	0	0	1	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0037	3439	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0038	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0039	3435	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0040	3439	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0041	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0042	3440	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0043	3439	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0044	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0045	3439	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0046	3439	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0047	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0048	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0049	3438	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0050	3438	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0051	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0052	3438	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0053	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0054	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0055	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0056	3435	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0057	3435	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0058	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0059	3435	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406